About the course

Course offered by Prof. Nassir Navab
Team: Ardit RamadaniZhongliang JiangLennart Bastian and Tianyu Song (Contact the course tutors)
Type: Praktikum (IN2106, IN4136)
SWS: 6
ECTS: 10 Credits

Table of contents


Final presentations (as of 06.07.2021): Zoom link has been provided by email, as well as instructions on uploading the presentation's slides. The order of presentations is based on the project id for both dates and it is published in the table below.

Intermediate presentations (as of 27.05.2021): Zoom link has been provided by email, as well as instructions on uploading the presentation's slides. The order of presentations is based on the project id for both dates and it is published in the table below.

Requirements presentations (as of 23.04.2021): Zoom link has been provided by email, as well as instructions on uploading the presentation's slides. The order of presentations is based on the project id, so we will start from project ID 03 until project ID 24 in chronological order. 

Project assignment (as of 17.04.2021): The project assignment has been complete. Please check the projects below to find out which project has been assigned to you. We have tried really hard to fulfill everyone's preferences and include as many supervisors as possible, we hope everyone is happy with the assigned project. You are advised to contact your supervisor as soon as possible to introduce yourself and appoint a meeting to kick-off the project. Good luck!

ChoiceNumber of studentsPercentage
1st choice assigned7 students40%
2nd choice assigned4 students22%
3rd choice assigned5 students27%
no submission2 student11%

Tab. Percentage of assigned projects based on student's preferences 

Project NumberSelected by
124 students
11, 13, 14, 15, 19 and 213 students

Tab. Top favorite projects (based on student's preferences)

Project announcements (as of 12.04.2021): Projects have been announced. Read through all project proposals and choose three favorite for which you write a short motivation and send it to all tutors by Friday, 16.04.2021 at 23:59 Munich time. The form to apply can be found at "Downloads > Student project application template". We will assign projects once everyone has submitted their preferences, we will try use the combination that maximizes the number of first choices. Until now, only the students that have proposed their own project have been assigned on the table below (those projects are reserved to those students and cannot be chosen from the rest). Good luck!

SourceNumber of projectsPercentage
Academia17 projects63%
Industry10 projects37%

Tab. Percentage of projects from academia and industry 

De-registration deadline (as of 18.02.2021): Monday, 05.04.2021, 23:59 Munich Time zone. All students who want to deregister the course without getting booked with a grade, please make sure to send the course tutors an email for deregistration before the deadline.

Zoom meetings (as of 18.02.2021): Please use your full name as your Zoom account (TUM account recommended), since it is really hard to match when we are taking absences.

Schedule update (as of 18.02.2021): A Preliminary schedule has been published for details on when the lectures and student presentations are going to take place. Student's presence is mandatory in all student presentation sessions (even if you are not going to present). Lecture sessions are optional beside Lecture 1. Absences are administered for all sessions, make sure to inform the tutors of the course with a valid reason in advance if you cannot make it in one session.   

Preliminary Meeting: The schedule for the preliminary meeting has been published. Please use the zoom details below to join. 

Updates due to CoViD-19: All lectures and student presentations, until any further notice, are scheduled to be held online through Zoom. Make sure to have Zoom installed and ready for the First session. The details for joining the lecture and presentation sessions, students will be informed through email in timely manner at least one day before the session. Please also follow course's web-site and TUMOnline for any further announcements.


For lecture sessions, presentation sessions and changes in the schedule, please also refer to TUMOnline.

DateTimePlaceTopicConducted byMaterials
Monday, 01.02.202114:00 - 15:00ZoomPreliminary meeting ("Vorbesprechung")Course tutorsPMSD_SS21_L00_PreliminaryMeeting
Monday, 05.04.202123:59 CESTEmailDe-registration Deadline
To: All tutors
Monday, 12.04.202111:00 - 12:00 (updated) ZoomLecture 1: Introduction and Project AnnouncementArdit Ramadani and Tianyu SongPMSD_SS21_L01_Introduction
Tuesday, 13.04.202109:00 - 12:00Zoom

Lecture 2: Presentation Tips and Project Management

Lecture 3: UML

Zhongliang Jiang

Lennart Bastian

Friday, 16.04.202123:59 CESTEmailDeadline to send project preferencesSeminar ParticipantsTo: All tutors
Monday, 26.04.202109:00 - 12:00ZoomRequirements PresentationsSeminar ParticipantsOrder of presentation from Project ID 03 to ID 24
Tuesday, 27.04.202110:00 - 12:00ZoomLecture 4: Documentation, Tests, Design Patterns & Integration StrategyArdit Ramadani
Monday, 31.05.202109:00 - 12:00ZoomIntermediate Presentations Part I

Seminar Participants

Order of presentation from Project ID 04 to ID 14
Tuesday, 01.06.202109:00 - 12:00ZoomIntermediate Presentations Part II

Seminar Participants

Order of presentation Project ID: 03 then 15 to ID 24
Monday, 12.07.202109:00 - 12:00ZoomFinal Presentations Part ISeminar ParticipantsOrder of presentation from Project ID 14 to ID 24
Tuesday, 13.07.202109:00 - 12:00ZoomFinal Presentations Part IISeminar ParticipantsOrder of presentation from Project ID 03 to ID 12

Available Projects

Projects will be announced in due time and presented during the Introductory meeting. Please communicate a selection of 3 choices, each with an explanation (ca. 5 sentences) for why you want to work on this project and how you meet the requirements specified in the project proposal. Use the Student Application Template provided in the Download section.


AR-Guided Cataract Surgery Training

Federico Acosta, Borja Sanchez and Michael Sommersperger

2Performance assessment in cataract surgery training

Federico Acosta, Fernando Benito and Michael Sommersperge



Federated LearningRami EisawyMohammedEisawy_Federated-learning

Deep Learning enabled MRI - Reconstruction Pipeline

4.1. Subproject I: Main deep learning-based recon pipeline
4.2. Subproject II: Undersampled Cartesian readout and image reconstruction implementation
4.3. Subproject III: Non-Cartesian readout trajectory (radial + spiral) implementation and data reconstruction
4.4. Subproject IV: Deep learning based data denoising throughout the pipeline (e.g. in both k-space & image space)

Dr. Pedro Gómez


5Fast Parallel DRR GeneratorMatthias Grimm
6Weighted Perspective-n-Point Solver in PythonMatthias GrimmSerif ErkamGrimm_Weighted-Perspective-Solver
7X-ray Tumor MimicMatthias Grimm
8Graphical User Interface for Preclinical Data Analysis ToolsIzabela Horvath
9Deformation-Aware Robotic USZhongliang JiangYueJiang_Deformation-aware-robotic-US
10Fuzzy Force Control in Robotic USZhongliang Jiang
11Open-source Deep-learning Tool for Brain Lesion and Structure SegmentationHongwei LiMargarytaLi_DL-tool-for-brain
12Open-source Multimodal-GANs Tool for Medical Image TranslationHongwei LiDongliangLi_Multimodal-GANs-Tool-for-Medical-Image-Translation



16Near-Infrared 3D Light-field Microscopy EvaluationJosue Page Vizcaino
17Integration Testing Pipeline for Smart4Diagnostics PlatformIvan BosnicIcxelS4Dx_Integration-Testing-Pipeline-for-S4Dx
18Software Framework for 3D Optical Coherence Tomography Data Annotation and VisualizationMichael Sommersperger and Alejandro Martin-Gomez
19Automatic Nutrition Analysis from ImagesEva Busam and Benjamin BusamThomasTopathlEAT_Automatic_Nutrition_Analysis_from_Images
20Visualization of logged athlete-dietsDr. Claudia Osterkamp-Baerens and Eva BusamHaichuanTopathlEAT_Visualization-of-logged-athlete-diets
21Gating failure detector for myocardial perfusion imagingPD Dr. Stephan Nekolla and Alberto VillagranRobVillagran_Gating-failure-detector-for-myocardial-perfusion-imaging
22Interactive 3D simulation planningMario Herzog, Gloria Zoernack and Bence RochlitzMichaelVirtonomy_Interactive-3D-simulation-planning
23Statistical Shape Modeling of Cardiac AnatomyBence Rochlitz, Ching-En Lin and Gloria ZörnackTimVirtonomy_Multi-organ-statistical-shape-model
24UV-C Lamp Position Optimization for Smart-UVC room disinfectionDr. Thomas Wendler and Francesca De BenettiVarshaWendler_deBenetti_Lamp-Optimization


4Elyes-9Serif Erkam14Dongliang19Andrea

Preliminary Meeting

When: Monday, 01.02.2021 - 14:00-15:00

Where: Zoom


Topic: PMSD Summer Semeseter 2021 - Preleminary meeting

Time: Feb 1, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna

Prerequisites and Registration

This course requires basic knowledge of C++ or similar OO programming language. The concepts of OO programming and other concepts as conducted in the Introduction to Computer Science lecture are assumed.

Registration through the TUM Matching System is mandatory. Your chances to be assigned to the course increase if you give the course a higher rank in your choices. If you already have a potential project, notify the course tutors via e-mail as soon as possible. This increases your chances to be assigned to the course, but you have to register through the matching system in any case. For further details about how the matching system works and its schedule please check the documentation.

Project Proposals

In this lab course, students work on clinical software projects and find solutions for problems in the field of medical applications. The student's workload should be around 10-14 hours per week for a period of 3 - 4 months on the assigned project (10 ECTS course).

Each project is expected to have one contact person (supervisor) who should be available for regular updates or if the student needs any help. In addition, the supervisors are kindly invited to participate in the student presentations (Requirements, Intermediate, Final) taking place at the CAMP chair. Each project supervisor will decide on 50% of the grade based on the student’s performance in the project. The other 50% will be decided upon by lecturers, based on the quality of project management and presentation skills of the student.

The project proposal should give a short introduction into the context and describe the most important aspects and expected outcome of the project. Furthermore it should clearly state the required (and optional) skills (programming language, experience with certain libraries etc.).

If you have a suitable project, preferably with a clinical or industrial partner, you are kindly invited to fill out the project proposal template and send it to the course tutors. The deadline for proposal submission is beginning of the lecture period for the Summer Semester 2021.


* TUM Informatics Student Code of Conduct

* TUM Citation Guide

* CAMP presentation slides for PowerPoint:  CAMPmaster.ppt

* CAMP presentation slides for Latex

* Student project application template

* Supervisor project proposal template

Literature and Resources

  • No labels